HOAB

Problem :

I use bash as shell and usually the autocompletion (with bash-completion) works well.

Until I create some Include files...

Solution :

Not a final one for every one, but a quick workaround is :

1. put your Include file in a directory, for example : ~/ssh/config.d
2. add those config file in bash_completion configuration.

sudo vi /usr/share/bash-completion/bash_completion

// Add your directory in the config file list

for i in /etc/ssh/ssh_config ~/.ssh/config ~/.ssh/config.d/* ~/.ssh2/config; do
    [[ -r $i ]] && config+=( "$i" )
done

That's all folks.